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                    <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">SNP<span class="caret"></span></a>
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                        <li><a href="SNP_PGC2.html"> PGC2 GWAS</a></li>
                        <li><a href="SNP_PGC3.html"> PGC3 GWAS</a></li>
                        <li><a href="Functional_SNPs.html"> Functional SNPs</a></li>
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                        <li><a href="geneList.html">Gene Browser System</a>
                            
                        <li><a href="Gene_PGC3_SMR.html">Genes identified by SMR</a></li>
                        <li><a href="Gene_TWAS_V2.html">Genes identified by TWAS</a></li>
                        
                        <li><a href="GeneExpressedDifferentially.html">Genes expressed differentially in PsychENCODE</a>
                        <li><a href="Genes_Identified_by_GWAS.html">Genes Identified by GWAS</a>
                        <li><a href="exonic.html">Genes Identified by exome sequencing</a>
                        <li><a href="CNV.html">Genes Identified by CNVs</a>
                        
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                        <li><a href="LocusZoom.html"> LocusZoom</a></li>
                        <li><a href="AnalysisTranscripteQTL.html">Transcript eQTL query</a></li>
                        <li><a href="AnalysiseQTL.html">Gene eQTL query</a></li>
                        <li><a href="ExpressionPatternAnalysis.html">Expression pattern analysis</a></li>
                        <li><a href="ProteinProteinInteraction.html">Protein-Protein Interaction</a></li>
                        <li><a href="Co-expression.html">Co-expression</a></li>
                        <li><a href="GTEx.html">Tissue expression analysis</a></li>
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            <h3 align="center">Manual</h3>
            <div id="contents">
                <ol type="A">
                    <li><a href="#SNP">SNP</a></li>
                    <ol type="a">
                        <li><a href="#SNP_PGC2">PGC2 GWAS & PGC3 GWAS</a></li>
                        <li><a href="#Functional_SNPs">Functional SNPs</a></li>
                    </ol>
                    <li><a href="#Gene">Gene</a></li>
                    <ol type="a">
                        <li><a href="#Gene_Browser_System">Gene Browser System</a></li>
                        <li><a href="#Genes_identified_by_SMR">Genes identified by SMR & Genes identified by SMR</a>
                        </li>
                        <li><a href="#ED">Genes expressed differentially in PsychENCODE</a></li>
                        <li><a href="#Genes_Identified_by_GWAS">Genes Identified by GWAS</a></li>
                        <li><a href="#Genes_Identified_by_exome_sequencing">Genes Identified by exome sequencing</a>
                        </li>
                        <li><a href="#Genes_affected_by_CNVs">Genes affected by CNVs</a></li>

                    </ol>
                    <li><a href="#Analysis">Analysis</a></li>
                    <ol type="a">
                        <li><a href="#_LocusZoom"> LocusZoom</a></li>
                        <li><a href="#Transcript_eQTL_query">Transcript eQTL query</a></li>
                        <li><a href="#Gene_eQTL_query">Gene eQTL query</a></li>
                        <li><a href="#Expression_pattern">Expression pattern</a></li>
                        <li><a href="#Protein_Protein_Interaction">Protein-Protein Interaction</a></li>
                        <li><a href="#Co_expression">Co-expression</a></li>
                        <li><a href="#Tissue_expression_analysis">Tissue expression analysis</a></li>
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                <a name="SNP"></a>
                <h3>SNP:</h3>
                <a name="SNP_PGC2"></a> <h4>PGC2 GWAS & PGC3 GWAS</h4>
                <p><b>&nbsp;&nbsp;&nbsp;&nbsp;Users can input some SNPs (one SNP per line) or a genome position and then
                    click "search" button. they will get the results like figure1.</b></p>
                <img src="/picture/SNP_PGC2.jpg" class="img-responsive" style="margin: 0 auto;" width="80%">
                <p>Figure 1. Options for SNP search and SNP search result.</p>
            </div>
            <div class="manual">
                <a name="Functional_SNPs"></a> <h4>Functional SNPs</h4>
                <p><b>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users only need to input some SNPs (one SNP per line).
                    they will get the results like figure1.</b></p>
                <img src="/picture/Functional_SNPs.jpg" class="img-responsive" style="margin: 0 auto;" width="80%">
                <p>Figure 1. Options for SNP search and SNP search result.</p>
            </div>
            <div class="manual">
                <a name="Gene"></a>
                <h3>Gene:</h3>
                <a name="Gene_Browser_System"></a><h4>Gene Browser System</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, we used the dropdown navigation to visit the Gene Browser
                    System pages. </p>
                <img src="/picture/Gene_Browser_System.jpg" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Genes_identified_by_SMR"></a><h4>Genes identified by SMR & Genes identified by SMR</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users need to do the following 3 steps: 1. Select PGC2 or
                    PGC3; 2. Select a brain
                    eQTL dataset; 3. Input genes (one gene per line);</p>
                <img src="/picture/Genes_identified_by_SMR.jpg" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>

            <div class="manual">
                <a name="ED"></a><h4>Genes expressed differentially in PsychENCODE</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users only need to input interested genes (one gene per
                    line). In the results page, users can click boxplot to show the box picture.</p>
                <img src="/picture/ED3.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Genes_Identified_by_GWAS"></a><h4>Genes Identified by GWAS</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users need to select a GWAS and input interested genes (one
                    gene per line) or input a region.</p>
                <img src="/picture/GWAS.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Genes_Identified_by_exome_sequencing"></a><h4>Genes Identified by exome sequencing</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users need to do the following 2 steps: 1. Select de novo or
                    rare; 2. Input genes(one gene per line).</p>
                <img src="/picture/Genes-Identified-by-exome-sequencing.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Genes_affected_by_CNVs"></a><h4>Genes affected by CNVs</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users need to input interested genes (one gene per line) or
                    select interested cytoband or input interested region.</p>
                <img src="/picture/Gene_CNV.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Analysis"></a>
                <h3>Analysis:</h3>
                <a name="_LocusZoom"></a><h4> LocusZoom</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users only need to input a SNP or input a interested
                    gene. </p>
                <img src="/picture/LocusZoom.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Transcript_eQTL_query"></a><h4>Transcript eQTL query</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users need to do the following 2 steps: 1. Select a dataset;
                    2.Input transcript ids(one transcript id per line) or input SNPs(one SNP per line) . </p>
                <img src="/picture/TranscripteQTL.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Gene_eQTL_query"></a><h4>Gene eQTL query</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users need to do the following 2 steps: 1. Select a dataset;
                    2.Input genes(one gene per line) or input SNPs(one SNP per line) </p>
                <img src="/picture/Gene_eQTL_query.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Expression_pattern"></a><h4>Expression pattern</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users need to do the following 2 steps: 1.Input genes(one
                    gene per line); 2.Select a dataset. </p>
                <img src="/picture/Expression_pattern.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Protein_Protein_Interaction"></a><h4>Protein-Protein Interaction</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users need to do the following 2 steps: 1.Input genes(one
                    gene per line); 2.Select a display type.</p>
                <img src="/picture/Protein-Protein-Interaction.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Co_expression"></a><h4>Co-expression</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users need to do the following 2 steps: 1.Input genes(one
                    gene per line); 2.Select a minimum pearson correlation coefficient</p>
                <img src="/picture/Co_expression.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>
            <div class="manual">
                <a name="Tissue_expression_analysis"></a><h4>Tissue expression analysis</h4>
                <p>&nbsp;&nbsp;&nbsp;&nbsp;In this module, users only need to input a interested gene.</p>
                <img src="/picture/Tissueexpressionanalysis.png" class="img-responsive" style="margin: 0 auto;" width="80%">
            </div>

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